Items where Author is "Abubucker, Sahar"

McNulty, Samantha N. and Abubucker, Sahar and Simon, Gabriel M. and Mitreva, Makedonka and McNulty, Nathan and Fischer, Kerstin and Curtis, Kurt C. and Brattig, Norbert W. and Weil, Gary J. and Fischer, Peter U. (2012) Transcriptomic and Proteomic Analyses of a Wolbachia-Free Filarial Parasite Provide Evidence of Trans-Kingdom Horizontal Gene Transfer. Plos one, 7 (9). pp. 1-12.

Abubucker, Sahar and Segata, Nicola and Goll, Johannes and Schubert, Alyxandria M. and Izard, Jacques and Cantarel, Brandi L. and Rodriguez-Mueller, Beltran and Zucker, Jeremy and Thiagarajan, Mathangi and Henrissat, Bernard and White, Owen and Kelley, Scott T. and Methe, Barbara and Achloss, Patrick D. and Gevers, Dirk and Mitreva, Makedonka and Huttenhower, Curtis (2012) Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome. PLoS Computational Biology, 8 (6). pp. 1-17.

Rao, Ramakrishna U and Huang, Yuefang and Abubucker, Sahar and Heinz, Michael and Crosby, Seth D. and Mitreva, Makedonka and Weil, Gary J. (2012) Effects of doxycycline on gene expression in Wolbachia and Brugia malayi adult female worms in vivo. Journal of Biomedical Science, 19 (21). pp. 1-15.

Wang, Zhengyuan and Zarlenga, Dante S. and Martin, John and Abubucker, Sahar and Mitreva, Makedonka (2012) Exploring metazoan evolution through dynamic and holistic changes in protein families and domains. BMC Evolutionary Biology. pp. 2-17.

Abubucker, Sahar and Martin, John and Taylor, Christina M. and Mitreva, Makedonka (2011) HelmCoP: An Online Resource for Helminth Functional Genomics and Drug and Vaccine Targets Prioritization. PLoS One, 6 (7). e21832.

Taylor, Christina M. and Abubucker, Sahar and Fischer, Kerstin and Wang, Zhengyuan and Martin, John and Jiang, Dao-Jun and Rosso, Marie and Li, Ben-Wen and Fischer, Peter U. and Mitreva, Makedonka (2011) Targeting Protein-Protein Interactions for Parasite Control. Plos One, 6 (4). pp. 1-12.

Li, Ben-Wen and Rush, Amy C. and Jiang, Dao-Jun and Mitreva, Makedonka and Abubucker, Sahar and Weil, Gary J. (2011) Gender-associated genes in filarial nematodes are important for reproduction and potential intervention targets. PLoS Neglected Tropical Diseases, 5 (1). e947.

Cantacessi, Cinzia and Jex, Aaron R. and Hall, Ross S. and Young, Neil D. and Campbell, Bronwyn E. and Joachim, Anja and Nolan, Matthew J. and Abubucker, Sahar and Sternberg, Paul W. and Ranganathan, Shoba and Mitreva, Makedonka and Gasser, Robin B. (2010) A practical, bioinformatic workflow system for large data sets generated by next-generation sequencing. Nucleic Acids Research, 38 (17). pp. 1-12.

Wang, Zhengyuan and Abubucker, Sahar and Martin, John and Wilson, Richard K. and Hawdon, John and Mitreva, Makedonka (2010) Characterizing Ancylostoma caninum transcriptome and exploring nematode parasitic adaptation. BMC Genomics - Plos Neglected tropical diseases (www.plosntds.org ) - Open Acecess. pp. 1-19.

Hao, You-Jin and Montiel, Rafael and Abubucker, Sahar and Mitreva, Makedonka and Simõesa, Nelson (2010) Transcripts analysis of the entomopathogenic nematode Steinernema carpocapsae induced in vitro with insect haemolymph. In: Molecular Biochemical Parasitology. Elsevier B.V., pp. 79-86.

Martin, John and Abubucker, Sahar and Heizer, Esley and Taylor, Christina M. and Mitreva, Makedonka (2010) Nematode.net update 2011: addition of data sets and tools featuring next-generation sequencing data. Nucleic Acids Research, 40. D720-D728.

Gao, Xin and Wang, Zhengyuan and Martin, John and Abubucker, Sahar and Zhang, Ziping and Mitreva, Makedonka and Hawdon, John (2010) Identification of hookworm DAF-16/FOXO response elements and direct gene targets. PLoS One, 5 (8). e12289.

Mitreva, Makedonka and Papenfuss, Antony T. and Whittington, Camilla M. and Locke, Devin P. and Mardis, Elaine and Wilson, Richard K. and Abubucker, Sahar and Wong, Emily SW and Hsu, Artur and Kuchei, Philip W. and Belov, Katherine and Warren, Wesley (2010) Novel venom gene discovery in the platypus. Genome Biology, 11. pp. 1-13.

Yin, Yong and Martin, John and Abubucker, Sahar and Wang, Zhengyuan and Wyrwicz, Lucijan and Rychlewski, Leszek and McCarter, James P. and Wilson, Richard K. and Mitreva, Makedonka (2009) Molecular determinants archetypical to the phylum Nematoda. BMC Genomics. pp. 1-14.

Martin, John and Abubucker, Sahar and Wylie, Todd and Yin, Yong and Wang, Zhengyuan and Mitreva, Makedonka (2009) Nematode.net update 2008: improvements enabling more efficient data mining and comparative nematode genomics . Nucleic Acids Research, 37. D571-D578.

Wang, Zhengyuan and Martin, John and Abubucker, Sahar and Yin, Yong and Gasser, Robin B. and Mitreva, Makedonka (2009) Systematic analysis of insertions and deletions specific to nematode proteins and their proposed functional and evolutionary relevance. BMC Evolutionary Biology, 9 (23). pp. 1-14.

Yin, Yong and Martin, John and Abubucker, Sahar and Scott, Alan L. and McCarter, James P. and Wilson, Richard K. and Jasmer, Douglas P. and Mitreva, Makedonka (2008) Intestinal Transcriptomes of Nematodes: Comparison of the Parasites Ascarissuum and Haemonchuscontortus with the Free-living Caenorhabditiselegans. Plos Neglected tropical diseases (www.plosntds.org ) - Open Access, 2 (8). pp. 1-12.

Abubucker, Sahar and Martin, John and Yin, Yong and Fulton, Lucinda and Yang, Shiaw-Pyng and Hallsworth-Pepin, Kym and Johnston, J. Spencer and Hawdon, John and McCarter, James P. and Wilson, Richard K. and Mitreva, Makedonka (2008) The canine hookworm genome: analysis and classification of Ancylostoma caninum survey sequences. Mol Biochem Parasitol, 157 (2). pp. 187-192.

Wylie, Todd and Martin, John and Abubucker, Sahar and Yin, Yong and Messina, David and Wang, Zhengyuan and McCarter, James P. and Mitreva, Makedonka (2008) NemaPath: online exploration of KEGG-based metabolic pathways for nematodes. BMC Genomics, 9 (525). pp. 1-10.